mirrors / dmlc--dgl

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0.1.x
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169 次代码提交

作者 SHA1 备注 提交日期
Minjie Wang af23c45726 [Release] update version (#297) 
* update version; add news.md; modify contributing.md

* change urls to dmlc
 2018-12-11 15:40:51 -05:00
Da Zheng 18ed7868fe [Doc] update neighbor sampler doc. (#287) 2018-12-11 12:48:22 -05:00
Minjie Wang 597ac7f8b5 [Release] v0.1.3 (#288) 
* 0.1.2 release

* oops

* more fixes on windows

* [Bugfix] fix download dir (#275)

* fix download dir

* add doc for the env var

* windows 7 -> 10

* doc update

* [Bugfix] Fix conversion from networkx (#286)

* fix from_nx when no edge id available

* add test cases

* more detailed tests

* more comments

* [Bugfix] Switch to sparse_coo_matrix for torch 1.0+ (#282)

* switch to sparse_coo_matrix for torch 1.0+

* fix bug when the version is 0.4.1.post2

* change to distutils
 2018-12-11 01:30:47 -05:00
Gan Quan 37feb479fd [Release] 0.1.2 updates (#276) 
* 0.1.2 release

* oops

* more fixes on windows

* [Bugfix] fix download dir (#275)

* fix download dir

* add doc for the env var
 2018-12-07 01:54:13 -05:00
Da Zheng c0d1f8e43b small fixes in the immutable graph index. (#271) 
* small fix in immutable graph index.

* minor fix.
 2018-12-06 19:01:14 -08:00
Sheng Zha f720ce13e1 [Build] support universal wheel on linux (#272) 2018-12-06 18:06:58 -05:00
Da Zheng 1bbc885b40 move batcher to examples. (#269) 
* move pytorch code to examples.

* fix.

* fix tutorial
 2018-12-06 06:45:27 -08:00
Da Zheng 7aa494b3bc [Bugfix][Doc] explain the batch dimension in the doc and many fix (#266) 
* add more unit tests for mxnet.

* fix.

* explain the batch dimension.

* update doc.

* disable unit tests on DFS.

* fix graph traversal.
 2018-12-06 00:48:57 -05:00
Minjie Wang 612a7fb996 [Release] setup version (#264) 2018-12-05 19:33:06 -05:00
Minjie Wang c620bfc2b7 [Doc] faq & env (#263) 
* faq & env

* add update version script; 0.0.1 -> 0.1.0
 2018-12-05 19:18:33 -05:00
Da Zheng 063ed69cdf [BUGFIX] fix a bug in creating immutable graph index. (#251) 
* fix a bug in creating immutable graph index.

* fix for new changes in the backend API.

* fix for creating immutable graph index from coo matrix.

* retrigger
 2018-12-05 17:51:50 -05:00
Minjie Wang 2194b7dfa6 [Bugfix] edge order is not preserved when converting from edge list (#262) 2018-12-05 17:41:26 -05:00
Lingfan Yu a1d50f0f53 [Refactor] Rename before release (#261) 
* include/dgl/runtime

* include

* src/runtime

* src/graph

* src/scheduler

* src

* clean up CMakeLists

* further clean up in cmake

* install commands

* python/dgl/_ffi/_cython

* python/dgl/_ffi/_ctypes

* python/dgl/_ffi

* python/dgl

* some fix

* copy right
 2018-12-05 16:45:36 -05:00
VoVAllen cd907cddfa [Tutorial] Add sse tutorial & MXNet Tutorial CI (#252) 
* add sse tutorial

* add mxnet tutorial ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix ci

* Fix ci

* Fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix CI

Fix CI image

* permission fix

* fix a bug in the code.

* small fix

* fix doc

* fix ci

* shorten the iters

* fix

* remove extra file

* add load_backend api to dynamically switch to another backend

* try fix

* fix tutorial

* fix tutorial

* fix bug in tutorial
 2018-12-05 16:21:44 -05:00
Da Zheng 899d125bb1 Add tests for MXNet and throw NotImplementedError if not implemented (#258) 
* add more unit tests for mxnet.

* fix.
 2018-12-05 10:41:33 -08:00
Da Zheng 7c7cc7e0c2 [sampler] Adjust the sampler API for the future extension. (#243) 
* return seed ids.

* fix tests.

* implement.
 2018-12-05 10:05:10 -08:00
Lingfan Yu 378c264561 [Model] Fix GCN Normalization (#249) 
* WIP

* lr -> 0.01

* new cora dataset

* normalization code

* minor format change

* normalization factor for deg bucket
 2018-12-05 12:32:10 -05:00
Minjie Wang 21255b6528 [Bugfix] tolist and dependencies in dgl.data (#239) 
* change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data

* fix import

* fix __all__ and some docstring
 2018-12-05 12:20:59 -05:00
Minjie Wang eafcb7e7f5 [Bugfix][MXNet] Fix edge order and builtin max bug in mx (#247) 
* Fix edge order and builtin max bug in mx

* fix as requested
 2018-12-05 01:32:54 -08:00
Lingfan Yu 274e1082f5 [Doc] API doc string for many components (#245) 
* builtin function docstring

* init docstring

* view docstring

* add init to index and fix

* node /edge feature

* Example -> Examples

* fix func hyperlink

* traversal

* fix

* from/to_networkx docstring

* minor

* fix duplicate label

* comment about tensor framework

* from scipy sparse matrix

* fix format errors
 2018-12-04 17:52:00 -05:00
Mufei Li 7cca500787 [Doc] Computing with DGLGraph (#212) 
* Docs for graph computing

* Docs for graph computing

* Fix

* WIP

* update the docstring
 2018-12-04 16:51:46 -05:00
Da Zheng c99f423718 [Sampler] extend sampler (#238) 2018-12-04 16:46:26 -05:00
Lingfan Yu 455ea48570 [Bugfix] Conversion between networkx and DGLGraph (#244) 
* copy feature to networkx

* fix to_network for multi-graph

* test case for nx conversion

* iterate over Index returns plain int instead of numpy.int64

* fix from_network multi-edge bug
 2018-12-04 16:19:11 -05:00
Da Zheng a5a35d1f7a [Sampler] improve random shuffle performance in sampler (#228) 
* fix.

* make it generic.

* add the API.

* fix.

* remove mxnet.
 2018-12-04 09:24:32 -08:00
Da Zheng dafe46710b [Bug][MXNet] fix an API in immutable graph index. (#233) 2018-12-04 00:37:18 -05:00
HQ b1e8d95e99 [Doc] LGNN tutorial (#210) 
* tutorial notebook added

* lg tutorial cleaned up

* dataset scaffold

* move dataloader to data

* fix model

* remove todo

* utils seperated

* [model]line graph new implementation + tutorial + binary sub graph dataset

* [tutorial] line graph sphinx scaffold

* [tutorial] lgnn tutorial improved

* [tutorial] remove notebook

* [tutorial] fix lg and gcn links

* [tutorial] fix random seed

* [tutorial]fix

* WIP

* code refactor done

* new mini dataset; remove utils code

* fix

* word fix

* fix link

* minor fix

* minor fix

* minor fix
 2018-12-03 17:59:50 -05:00
Da Zheng 2c170a8c17 [Graph][Bugfix] Fix the API of map_to_subgraph_nid (#226) 
* correct vid mapping API.

* fix sse.
 2018-12-03 17:16:35 -05:00
Lingfan Yu b0c76d48be [Bug] fix __slots__ in view.py (#230) 2018-12-03 13:28:22 -05:00
Lingfan Yu 52ed09a392 [Bug] Fix inplace update (#221) 
* inplace write row op and executor

* update scheduler and graph to use inplace write

* fix

* fix bug

* test case for inplace

* fix bugs for inplace apply node/edge

* fix comments

* th.allclose -> U.allclose
 2018-12-02 19:14:39 -05:00
Gan Quan 5680f8dc13 [DOC] Documentation strings for graph mutation, queries, and subgraphing (#207) 
* docstrings for graph mutation & queries

* [Doc] contrib.sampler. (#200)

* subgraph docs

* updates
 2018-12-02 14:41:25 -05:00
Minjie Wang 57daf9c9a6 [Graph] small fix on the all index (#219) 2018-12-02 13:39:04 -05:00
Da Zheng 57b07fce92 [Model] Accelerate SSE (#172) 
* lazy eval edge ids.

* parallelize node id lookup.

* fix a bug.

* use mxnet for index.

* use update_all in the subgraph training.

* sample neighbors.

* Revert "parallelize node id lookup."

This reverts commit e661f69bb06cb5a7c246f0e106f245e27800e220.

* update README.

* cache subgraphs.

* support all degrees.

* cache adj in CPU.

* fix a bug in sse.

* print.

* raise error on mutable graphs.

* measure train time per epoch.

* fix a bug in graph_index.

* remove readonly in DGLSubGraph.

* cache subgraph properly.

* accelerate getting adjacency.

* split infer.

* lazy eval edges.

* specify inference mode.

* update for new sampler.

* use new mxnet sampling api.

* fix indent.

* remove profiling code.

* remove mxnet from sampler.

* return a lambda function for graph edges.

* add docs for immutable subgraph.

* Revert "return a lambda function for graph edges."

This reverts commit 0de5d7f100e230c518a3fb8976a6227f474d09ee.

* get parent_eid.
 2018-12-02 12:43:25 -05:00
Haibin Lin 5278220f85 update s3 links (#215) 2018-12-02 20:48:29 +08:00
Lingfan Yu 53ea03ad82 [Doc] Fix doc bug and warning (#213) 
* fix dgmg tutorial indentation

* bug in incidence_matrix docstring

* remove print
 2018-12-01 18:58:56 -05:00
Lingfan Yu 0f121eeb76 [Doc] RGCN tutorial (#206) 
* rgcn tutorial

* data processing for rgcn

* many fix

* requirements for rgcn tutorial

* fix comments

* description of rgcn dataset

* author

* bug fix

* move all dataset to s3
 2018-12-01 14:58:13 -05:00
Haibin Lin cccc2339c1 [Dataset] update s3 links (#209) 2018-12-01 14:45:30 -05:00
VoVAllen 91141a9826 [Dataset] Move file from dropbox to s3 (and fix ci fail due to sst dataset) (#205) 
* move file from dropbox to s3

* fix ci and move sst to s3

* remove blank line
 2018-11-30 19:44:55 -05:00
Zihao Ye c80dc5e012 [model] Tree-LSTM update & hotfix(dropbox link) (#202) 
* change the signature of node/edge filter

* upd filter

* Support multi-dimension node feature in SPMV

* stable version

* hotfix

* upd tutorial

* upd README
 2018-11-30 19:39:49 -05:00
Mufei Li 3a0f86a663 [Doc] data (#198) 
* Fix dataset

* Track data APIs
 2018-11-30 11:40:22 -05:00
Mufei Li 485f6d3abd [Doc] udf (#195) 
* Docstring for udf

* Track udf docs

* Improve

* Improved

* Delete udf.py

* Improve
 2018-11-30 00:38:58 -05:00
Haibin Lin 9e8261735f [Doc] Minor doc update for mxnet/immutable_graph_index (#194) 2018-11-29 20:59:13 -05:00
Mufei Li 41c9c3b94b [Doc] Fix batched_graph doc (#193) 2018-11-29 12:23:10 -05:00
Mufei Li 8dc6784b12 [Doc] docstring for BatchedDGLGraph + some fix (#184) 
* Update doc

* Update batched_graph.py

* Fix

* Fix

* Fix

* Fix
 2018-11-29 09:53:16 -05:00
Gan Quan a8fa85c7d5 Conda builds (#187) 
* conda recipe

* switching to source build

* trying windows build

* wip

* windows build works
 2018-11-29 02:21:53 -05:00
Mufei Li a0d0b1ea00 [Model] Fix + batched DGMG (#175) 
* DGMG with batch size 1

* Fix

* Adjustment

* Fix

* Fix

* Fix

* Fix

* Fix has_node and __contains__

* Batched implementation for DGMG

* Remove redundant dependency

* Adjustment

* Fix

* Add comments
 2018-11-29 00:13:30 +08:00
HQ 5cda368d79 [Model] SBM hotfix (#137) 
* [Model]SBM hotfix

* [Model] remove backend in data
 2018-11-27 11:58:03 -05:00
Minjie Wang 2c2b747808 [Install] pip install (#180) 
* add bdist_wheel build

* fix wheel build

* fix setup

* fix ci

* fix setup

* fix

* fix setup

* poke ci

* fix

* poke ci

* clean build

* fix ci

* addback the env
 2018-11-27 00:47:01 -05:00
Minjie Wang b82b8e2d2a [Schedule] get rid of unnecessary graph.edges() call for v2v-spmv update_all (#179) 2018-11-27 00:37:03 -05:00
Minjie Wang 524e656dd6 [Bugfix] enable SPMV for multi-dimension node feature (#178) 
* Support multi-dimension node feature in SPMV

* fix as requested
 2018-11-26 11:12:28 -05:00
Minjie Wang b1eeb93449 [Bugfix][Runtime] Zero degree behaviors (#177) 
* fix recv nodes are all 0deg; fix hybriddict does not through keyerror properly

* fallback to apply_nodes when all nodes are 0deg; WIP on pull spmv 0deg

* new 0deg behavior

* new 0deg behavior

* update mx utest for pull-0deg

* fix mx

* fix mx

* get rid of unnecessary sort-n-unique
 2018-11-25 22:33:08 -05:00